Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12806609 chr11:24231053 G/T 4.41E-14 489 30.97 31.27 13.52 KM Plot
PRAD rs12807669 chr11:24231056 T/C 4.41E-14 489 30.97 31.27 13.52 KM Plot
PRAD rs12820602 chr12:104394926 G/T 4.89E-6 494 30.8 31.37 24.27 KM Plot
PRAD rs12862998 chr13:45218886 G/A 9.99E-16 480 32.5 25.85 17.47 KM Plot
PRAD rs12869485 chr13:20207226 A/T 2.27E-5 494 30.77 31.72 22.67 KM Plot
PRAD rs12872099 chr13:20350760 G/C 2.2E-5 494 30.53 32.47 22.67 KM Plot
PRAD rs12902624 chr15:82533236 C/G 3.92E-10 484 29.52 35.77 29 KM Plot
PRAD rs12907385 chr15:82415798 C/T 1.18E-6 486 30.73 33.37 36.65 KM Plot
PRAD rs12914005 chr15:76765667 A/G 8.02E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs12915248 chr15:76765615 A/T 8.84E-5 494 28.43 31.65 30.87 KM Plot
PRAD rs12919449 chr16:5004408 T/C 4.9E-5 479 31.43 29.63 26.37 KM Plot
PRAD rs12919777 chr16:5004839 A/G 4.88E-5 480 31.35 29.63 26.37 KM Plot
PRAD rs12925484 chr16:5006524 C/G 0.000155 483 31.27 29.63 26.37 KM Plot
PRAD rs12926279 chr16:84140589 A/G 7.19E-6 494 29.23 29.97 31.07 KM Plot
PRAD rs12928442 chr16:5006781 G/C 0.000154 482 31.27 30.27 26.37 KM Plot